PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G10140.1
Common NameAGL25, FLC, FLF, RSB6, T31P16.130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 21865.2 Da    PI: 8.4527
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G10140.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.81.7e-24959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienks rqvtfskRrng++ KA  LSvLCda va++++s +gkly +ss
  AT5G10140.1  9 KRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSS 59
                 79***********************************************96 PP

2K-box485.3e-17841651899
        K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  q ++ +  + +e L+    +l+G ++++ s+  L qLe++Le++l+  R+kK+el+l+ +e+l++kek+l+een+ L +++e
  AT5G10140.1  84 QSKALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVLASQME 165
                  4455555678899999999**********************************************************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.955161IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-35160IPR002100Transcription factor, MADS-box
CDDcd002654.31E-38278No hitNo description
SuperFamilySSF554552.35E-28279IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.81780170IPR002487Transcription factor, K-box
PfamPF014861.1E-1291164IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0010048Biological Processvernalization response
GO:0030154Biological Processcell differentiation
GO:0042752Biological Processregulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0043234Cellular Componentprotein complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000025anatomyroot tip
PO:0000037anatomyshoot apex
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009013anatomyportion of meristem tissue
PO:0009031anatomysepal
PO:0009046anatomyflower
PO:0009066anatomyanther
PO:0020021anatomyintegument
PO:0020030anatomycotyledon
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0007057developmental stageseed germination stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0025374developmental stageseed dormant stage
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG  60
DNLVKILDRY GKQHADDLKA LDHQSKALNY GSHYELLELV DSKLVGSNVK NVSIDALVQL  120
EEHLETALSV TRAKKTELML KLVENLKEKE KMLKEENQVL ASQMENNHHV GAEAEMEMSP  180
AGQISDNLPV TLPLLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_D3e-17270168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C3e-17270168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B3e-17270168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A3e-17270168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3p57_J4e-17270168Myocyte-specific enhancer factor 2A
3p57_I4e-17270168Myocyte-specific enhancer factor 2A
3p57_D4e-17270168Myocyte-specific enhancer factor 2A
3p57_C4e-17270168Myocyte-specific enhancer factor 2A
3p57_B4e-17270168Myocyte-specific enhancer factor 2A
3p57_A4e-17270168Myocyte-specific enhancer factor 2A
3kov_J4e-17270168Myocyte-specific enhancer factor 2A
3kov_I4e-17270168Myocyte-specific enhancer factor 2A
3kov_B4e-17270168Myocyte-specific enhancer factor 2A
3kov_A4e-17270168Myocyte-specific enhancer factor 2A
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible250476_at0.0
Expression AtlasAT5G10140-
AtGenExpressAT5G10140-
ATTED-IIAT5G10140-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Found in shoots of non-flowering plants grown under long-day conditions at days 4 to 15, and in shoots of plants grown under short-day conditions at days 4 to 11 after germination. Expressed in embryos from the early globular stage. FLC is not imprinted and both parental alleles contribute equally to expression in embryos. Expression is repressed during gametogenesis, and is then reactivated after fertilization in embryos. {ECO:0000269|PubMed:19121105}.
UniprotTISSUE SPECIFICITY: High expression in the vegetative apex and in root tissue and lower expression in leaves and stems. Not detected in young tissues of the inflorescence. Before fertilization, expressed in ovules, but not in pollen or stamens, of non-vernalized plants. After vernalization, not detected in ovules. {ECO:0000269|PubMed:19121105}.
Functional Description ? help Back to Top
Source Description
TAIRMADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3 to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.
UniProtPutative transcription factor that seems to play a central role in the regulation of flowering time in the late-flowering phenotype by interacting with 'FRIGIDA', the autonomous and the vernalization flowering pathways. Inhibits flowering by repressing 'SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1'. {ECO:0000269|PubMed:10716723, ECO:0000269|PubMed:11283346, ECO:0000269|PubMed:19121105}.
Function -- GeneRIF ? help Back to Top
  1. We propose a hypothesis to illustrate the distinct mechanism by which vernalization regulates the expression of FLC in cabbage and Arabidopsis.
    [PMID: 15734903]
  2. The contribution to variation in flowering time and vernalization of the two genes FRIGIDA (FRI) and FLOWERING LOCUS C (FLC), previously shown to be important determinants in natural variation of flowering time is reported.
    [PMID: 15908596]
  3. The effects of Arabidopsis Flowering Locus C on flowering initiation and biomass in transgenic N. tabacum is reported.
    [PMID: 16008094]
  4. The role of DNA methylation of FLC in the vernalization pathway of A. thaliana is reported.
    [PMID: 16236152]
  5. SDG8-mediated H3K36 methylation is a novel epigenetic memory code required for FLC expression in preventing early flowering
    [PMID: 16299497]
  6. FLC lengthens the circadian period specifically at 27 degrees C, contributing to temperature compensation of the circadian clock.
    [PMID: 16473970]
  7. ATARP6 positively regulates FLC accumulation.
    [PMID: 16495307]
  8. FRI upregulates FLC expression that represses flowering
    [PMID: 16547097]
  9. lhp1 mutants revealed a role for LIKE HETEROCHROMATIN PROTEIN 1 in maintaining epigenetic silencing of FLC
    [PMID: 16549797]
  10. FLC delays flowering by repressing production in the leaf of at least two systemic signals, one of which is controlled by the RAF kinase inhibitor-like protein FT.
    [PMID: 16600915]
  11. FLC is a component of a multimeric protein complex in vivo and that more than one FLC polypeptides can be present in the complex.
    [PMID: 16623882]
  12. under-expressed in the MGO3 mutant background
    [PMID: 16728410]
  13. This study has aided in the understanding of Flowering Locus C's role in the clock, as it reveals that the network affecting circadian timing is partially overlapping with the floral-regulatory network.
    [PMID: 16737527]
  14. Variation in epigenetic silencing of FLC appears to have contributed to Arabidopsis adaptation.
    [PMID: 17114581]
  15. SUF4 bound to the promoter of FLC in a chromatin immunoprecipitation assay, suggesting that SUF4 acts as a transcriptional activator of FLC after forming a complex with FRI and FRL1.
    [PMID: 17138694]
  16. FLC activation by the histone variant H2A.Z is required for the repression of flowering.
    [PMID: 17220196]
  17. Arabidopsis SWC6 (AtSWC6), SUPPRESSOR OF FRIGIDA 3 (SUF3) and PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1) are homologs of SWC6, ARP6 and SWR1 with roles in development, including floral repression through full activation of FLOWERING LOCUS C
    [PMID: 17470967]
  18. Attenuation of brassinosteroid signaling enhances FLC expression and delays flowering.
    [PMID: 17611230]
  19. ARABIDOPSIS THALIANA HOMEOBOX 1 (ATH1)controls floral competency as a specific activator of FLOWERING LOCUS C (FLC) expression.
    [PMID: 17908157]
  20. Data show that the expression of FLOWERING LOCUS C was repressed by Arabidopsis relatives of the human lysine-specific Demethylase1 and thus promote the floral transition.
    [PMID: 17921315]
  21. Trimethyl-lysine 27 (K27me3) is enriched at the start of the FLC gene during cold treatment, before spreading across the locus after vernalization.
    [PMID: 17980595]
  22. There is a close association of FCA and FLD in mediating H3K4 demethylation and thus transcriptional silencing of FLC.
    [PMID: 17996704]
  23. Data show that FLC expression can be promoted by SIZ1 by repressing FLD activity through sumoylation.
    [PMID: 18069938]
  24. The role of FLX in the timing of flowers and the expression of other flowering-related proteins, including FRIGIDA and FLC, is reported.
    [PMID: 18156133]
  25. arginine methylation of FLC chromatin is part of the histone code that is required for mitotic stability of the vernalized state
    [PMID: 18178621]
  26. Data show that the epigenetic regulation of the floral repressor FLOWERING LOCUS C was done by ATX1 and ATX1 directly binds the active FLC locus before flowering and that this interaction is released upon the transition to flowering.
    [PMID: 18375656]
  27. Variation in regulation of this protein may generate different flowering behaviors.
    [PMID: 18444908]
  28. 'Activating' H3K4me3 and 'silencing' H3K27me3 modifications co-exist at 5'-end nucleosomes of transcriptionally active FLC-gene, while highly transcribed AP1 displays neither of the two marks.
    [PMID: 18638531]
  29. a low red to far-red ratio lessened the effects of FLC despite continued FLC expression. A low red to far-red ratio required the photoperiod-pathway genes GIGANTEA (GI) and CONSTANS (CO) to fully accelerate flowering in long days
    [PMID: 18790998]
  30. The monoubiquitination of H2B in the chromatin of the FLC locus via UBC1,UBC2 HUB1, and HUB2 represents a novel form of histone modification that is involved in flowering time regulation.
    [PMID: 18849490]
  31. PRC2-like complexes containing CLF, EMF2 and FIE, directly interact with and deposit into FT, FLC and FLC relatives repressive trimethyl H3K27 leading to the suppression of active H3K4me3 in these loci, repressing expression of these flowering genes.
    [PMID: 18852898]
  32. FLC is post-translationally modified by phosphorylation which leads to early flowering.
    [PMID: 18988635]
  33. A mutation in a H2B deubiquitinase, UBIQUITIN-SPECIFIC PROTEASE26 (UBP26), results in an early-flowering phenotype in the ubp26 mutant in Arabidopsis
    [PMID: 19091875]
  34. Epigenetic reprogramming of FLC gene expression takes place during gametogenesis and embryogenesis.
    [PMID: 19121105]
  35. The regulation of CiMFL expression in time and space and in relation to environmental conditions is only partially conserved with respect to FLC isolated from A. thaliana.
    [PMID: 19291007]
  36. The frequencies of the FLC haplotypes were not significantly affected by selection under spring-annual conditions.
    [PMID: 19317844]
  37. the muted flowering time response of Bla-6 results from high levels of the floral repressor FLC, blocking the low red light induction of FT.
    [PMID: 19563438]
  38. Major flowering time gene, flowering locus C, regulates seed germination in Arabidopsis thaliana.
    [PMID: 19564609]
  39. PEP is a new factor for FLC upregulation, underscoring the importance of RNA-binding activities during developmental timing of flowering
    [PMID: 19576878]
  40. Data suggest that FLC is repressed via a novel pathway involving the SIR2 class of histone deacetylases.
    [PMID: 19825652]
  41. Results demonstrate the presence of feedback loop that delays flowering through the increase of FLC when a cold spell is transient but suppresses the cold response when floral induction occurs through the repression of cold-inducible genes by SOC1.
    [PMID: 19825833]
  42. Both classes of H3K4 methylases, atx1 and atxr7, appear to be required for proper regulation of FLC expression.
    [PMID: 19855050]
  43. characterization of RNA-mediated chromatin silencing of FLC; CstF64 and CstF77 are required for 3' processing of FLC antisense transcripts; targeted processing triggers localized histone demethylase activity and results in reduced FLC sense transcription
    [PMID: 19965720]
  44. cold-induced FLC antisense transcripts have an early role in the epigenetic silencing of FLC, acting to silence FLC transcription transiently; recruitment of the Polycomb machinery then confers the epigenetic memory
    [PMID: 20010688]
  45. CDC73 is required for high levels of FLC expression in a subset of autonomous-pathway-mutant backgrounds and functions both to promote activating histone modifications (H3K4me3) as well as preventing repressive ones (e.g. H3K27me3).
    [PMID: 20463090]
  46. analysis of control of seasonal expression of the Arabidopsis FLC gene in a fluctuating environment
    [PMID: 20534541]
  47. The transcriptional activation of FLC, how different activities are integrated at this one locus and why FLC regulation seems so sensitive to mutation in these conserved gene regulatory pathways, are discussed.
    [PMID: 20884277]
  48. findings show that a long intronic noncoding RNA (COLDAIR)] is required for the vernalization-mediated epigenetic repression of FLC; COLDAIR physically associates with a component of PRC2 and targets PRC2 to FLC
    [PMID: 21127216]
  49. Results suggest that AGL6 acts as a floral promoter with a dual role, the inhibition of the transcription of the FLC/MAF genes and the promotion of FT expression in Arabidopsis.
    [PMID: 21175890]
  50. These results indicate novel and FCA-independent roles for FY in the regulation of FLC.
    [PMID: 21209277]
  51. results demonstrate that the onset and the progression of vegetative phase change are regulated by different combinations of endogenous and environmental factors, and reveal a role for FLC in vegetative development
    [PMID: 21228003]
  52. effect of changes in transcription rate on the abundance of H3K27me3 in the FLC gene body, a chromatin region that includes sequences required to maintain FLC repression following vernalization
    [PMID: 21276103]
  53. Formation of the FRI complex leads to the active chromatin state of the FLC gene.
    [PMID: 21282526]
  54. Data show that the promoter and first exon of the FLC gene are sufficient to initiate repression during vernalization; this initial repression of FLC does not require antisense transcription.
    [PMID: 21713009]
  55. The spatial patterns of FRI, FLC, and PHYC polymorphisms are significantly associated with winter temperatures and spring and winter precipitations, respectively. The allelic variation in these genes is involved in climatic adaptation.
    [PMID: 21988878]
  56. Current understanding of the molecular mechanism of vernalization-mediated FLC silencing, is described.
    [PMID: 22078062]
  57. MSI5 acts in partial redundancy with FVE to silence FLOWERING LOCUS C (FLC), which is a crucial floral repressor subject to asRNA-mediated silencing, FLC homologs
    [PMID: 22102827]
  58. Antagonistic roles of SEPALLATA3, FT and FLC genes as targets of the polycomb group gene CURLY LEAF
    [PMID: 22363474]
  59. UGT87A2 regulates flowering time via the flowering repressor FLOWERING LOCUS C.
    [PMID: 22404750]
  60. study concludes that DCL4 promotes transcription termination of the FCA gene, reducing the amount of aberrant RNA produced from the locus
    [PMID: 22461611]
  61. These results are consistent with Del(-57) allele acting as a novel cis-regulatory FLC polymorphism that may confer climatic adaptation by increasing vernalization sensitivity.
    [PMID: 22494398]
  62. the dynamics of FLC transcription and associated histone H3K27me3 activity are closely linked biologically
    [PMID: 22543923]
  63. The mutations of AtPRMT10 derepress FLOWERING LOCUS C (FLC) expression resulting in a late-flowering phenotype.
    [PMID: 22729397]
  64. vacuolar and/or endocytic trafficking is involved in the FLC regulation of flowering time in A. thaliana
    [PMID: 22848750]
  65. The FLC loop is disrupted during vernalization, the cold-induced, Polycomb-dependent epigenetic silencing of FLC. Loop disruption parallels timing of the cold-induced FLC transcriptional shut-down and upregulation of FLC antisense transcripts.
    [PMID: 23222483]
  66. FLC gene family are differentially regulated during the course of vernalization to mediate proper vernalization response.
    [PMID: 23417034]
  67. FLC protein plays role in vernalization and de-vernalization responses.
    [PMID: 23581257]
  68. identified a homeodomain protein, AtNDX (At4g03090), that regulates COOLAIR, a set of antisense transcripts originating from the 3' end of Arabidopsis FLOWERING LOCUS C (FLC); R-loop stabilization mediated by AtNDX inhibits COOLAIR transcription, which in turn modifies FLC expression
    [PMID: 23641115]
  69. The FLOWERING LOCUS C clade members act as part of several MADS-domain complexes with partial redundancy, which integrate responses to endogenous and environmental cues to control flowering.
    [PMID: 23770815]
  70. Sumoylation of FLC is critical for its role in the control of flowering time and that AtSIZ1 positively regulates FLC-mediated floral suppression.
    [PMID: 24218331]
  71. HOS1 acts as a chromatin remodeling factor for FLC regulation under short-term cold stress.
    [PMID: 24220632]
  72. The miR169 family regulates stress-induced flowering by repressing the AtNF-YA transcription factor, which in turn reduces the expression of FLOWERING LOCUS C (FLC), allowing for the expression of FLC target genes
    [PMID: 24336445]
  73. HOS1 regulates FLC transcription via chromatin remodeling.
    [PMID: 24390058]
  74. BAF60 creates a repressive chromatin configuration at the FLC locus.
    [PMID: 24510722]
  75. Suggest that altered splicing of a long noncoding transcript COOLAIR can quantitatively modulate FLC gene expression through cotranscriptional coupling mechanisms.
    [PMID: 24725596]
  76. cdkc;2 specifically reduces transcription of COOLAIR antisense transcripts, which indirectly up-regulates FLC expression through disruption of a COOLAIR-mediated repression mechanism.
    [PMID: 24799695]
  77. five predominant FLC haplotypes defined by noncoding sequence variation. Genetic and transgenic experiments show that they are functionally distinct, varying in FLC expression level and rate of epigenetic silencing
    [PMID: 25035417]
  78. For many phases of the vernalization process H3K36me3 and H3K27me3 show opposing profiles in the FLC nucleation region and gene body, and H3K36me3 and H3K27me3 rarely coexist on the same histone tail; this antagonism is functionally important.
    [PMID: 25065750]
  79. JMJ30/AT3G20810 and JMJ32/AT3G45880, two members of the JmjC domain-only group of JMJ proteins, function as H3K27 demethylases and regulate FLC expression.
    [PMID: 25267112]
  80. genetic analysis showed COOLAIR and Polycomb complexes work independently in the cold-dependent silencing of FLC.
    [PMID: 25349421]
  81. The expression of FLC gene in Arabidopsis thaliana plants in extreme conditions in northern margins of species range.
    [PMID: 25474881]
  82. Our data better delineates the roles of PEP in plant development and, for the first time, links FLK to a morphogenetic process
    [PMID: 25658099]
  83. cold temperature exposure is likely to be registered in an all-or-nothing (digital) manner at the relevant gene FLOWERING LOCUS C
    [PMID: 25775579]
  84. a single natural intronic polymorphism in one haplotype affects FLC expression and thus flowering by specifically changing splicing of the FLC antisense transcript COOLAIR.
    [PMID: 25805848]
  85. The downstream targets of the SVP:FLC complex include a higher proportion of genes regulating floral induction, whereas those bound by either TF independently are biased towards floral development.
    [PMID: 25853185]
  86. Epigenetic memory of FLC expression is stored not in trans memory but in cis memory.
    [PMID: 25955967]
  87. Intragenic methylation triggered by RNA-directed DNA methylation (RdDM) promoted FT expression. DNA methylation of the FT gene body blocked flowering locus C (FLC)repressor binding to the CArG boxes.
    [PMID: 26076969]
  88. this study investigated how FCA and FLD transcriptionally repress FLC through analysis of Pol II occupancy.
    [PMID: 26699513]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00079ChIP-seq26531826Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G10140.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Epigenetically down-regulated by vernalization. Vernalization repression is initiated by VIN3. Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. Up-regulated by HUA2. Down-regulated by VOZ1 and/or VOZ2. Down-regulated by RBG7. {ECO:0000269|PubMed:14712276, ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:18573194, ECO:0000269|PubMed:19783648, ECO:0000269|PubMed:22904146}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Regulation -- ATRM (Manually Curated Upstream Regulators) ? help Back to Top
Source Upstream Regulator (A: Activate/R: Repress)
ATRM AT1G19350 (R), AT2G33835 (A), AT3G18990 (R), AT3G48430 (R), AT4G02560 (R), AT4G32980 (A)
Regulation -- ATRM (Manually Curated Target Genes) ? help Back to Top
Source Target Gene (A: Activate/R: Repress)
ATRM AT1G04400(R), AT1G18330(R), AT1G65480(R), AT2G45660(R), AT3G46640(A), AT4G20370(R), AT4G35900(R)
Interaction ? help Back to Top
Source Intact With
IntActSearch Q9S7Q7
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G10140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1165270.0AF116527.1 Arabidopsis thaliana cultivar Columbia MADS box protein FLOWERING LOCUS F (FLF) mRNA, complete cds.
GenBankAF5372030.0AF537203.1 Arabidopsis thaliana flowering locus C protein mRNA, complete cds.
GenBankAY9640920.0AY964092.1 Arabidopsis thaliana isolate N1203 flowering locus C protein mRNA, complete cds.
GenBankAY9640930.0AY964093.1 Arabidopsis thaliana isolate N1249 flowering locus C protein mRNA, complete cds.
GenBankAY9640950.0AY964095.1 Arabidopsis thaliana isolate N1337 flowering locus C protein mRNA, complete cds.
GenBankAY9640970.0AY964097.1 Arabidopsis thaliana isolate N1491 flowering locus C protein mRNA, complete cds.
GenBankBT0306370.0BT030637.1 Arabidopsis thaliana unknown protein (At5g10140) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196576.11e-140MADS-box protein FLOWERING LOCUS C
SwissprotQ9S7Q71e-141FLC_ARATH; MADS-box protein FLOWERING LOCUS C
TrEMBLQ5Q9J11e-139Q5Q9J1_ARATH; At5g10140
STRINGAT5G10140.11e-139(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM9861987
Representative plantOGRP1617761
Publications ? help Back to Top
  1. Sheldon CC, et al.
    The FLF MADS box gene: a repressor of flowering in Arabidopsis regulated by vernalization and methylation.
    Plant Cell, 1999. 11(3): p. 445-58
    [PMID:10072403]
  2. Smith HB
    Planned parenthood in Arabidopsis: FLOWERING LOCUS C.
    Plant Cell, 1999. 11(5): p. 763-4
    [PMID:10330462]
  3. Michaels SD,Amasino RM
    FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering.
    Plant Cell, 1999. 11(5): p. 949-56
    [PMID:10330478]
  4. Swarup K, et al.
    Natural allelic variation identifies new genes in the Arabidopsis circadian system.
    Plant J., 1999. 20(1): p. 67-77
    [PMID:10571866]
  5. Dennis ES, et al.
    Methylation controls the low temperature induction of flowering in Arabidopsis.
    Symp. Soc. Exp. Biol., 1998. 51: p. 97-103
    [PMID:10645430]
  6. Sheldon CC,Rouse DT,Finnegan EJ,Peacock WJ,Dennis ES
    The molecular basis of vernalization: the central role of FLOWERING LOCUS C (FLC).
    Proc. Natl. Acad. Sci. U.S.A., 2000. 97(7): p. 3753-8
    [PMID:10716723]
  7. Lee H, et al.
    The AGAMOUS-LIKE 20 MADS domain protein integrates floral inductive pathways in Arabidopsis.
    Genes Dev., 2000. 14(18): p. 2366-76
    [PMID:10995392]
  8. Sheldon CC, et al.
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